Publications

• . UPDATED AUGUST 2023 ;
• Hannah Locke, Kay D. Bidle, Kimberlee Thamatrakoln, Christopher T. Johns, Juan A. Bonachela, Barbra D. Ferrell, K. Eric Wommack. Marine viruses and climate change: Virioplankton, the carbon cycle, and our future ocean Advances in Virus Research 2022; 114:67-146
  DOI: https://doi.org/10.1016/bs.aivir.2022.09.001 · [Download PDF]
• Michael Maniscalco, Mark A. Brzezinski, Robert H. Lampe, Natalie R. Cohen, Heather M. McNair, Kelsey A. Ellis, Matthew Brown, Claire P. Till, Benjamin S. Twining, Kenneth W. Bruland, Adrian Marchetti, Kimberlee Thamatrakoln. Diminished carbon and nitrate assimilation drive changes in diatom elemental stoichiometry independent of silicification in an iron limited assemblage ISME Communications 2022; 2(57)
  DOI: https://doi.org/10.1038/s43705-022-00136-1 · [Download PDF]
• Laure Arsenieff, Kei Kimura, Chana F. Kranzler, Anne-Claire Baudoux, Kimberlee Thamatrakoln. Diatom Viruses The Molecular Life of Diatoms 2022;
  DOI: https://doi.org/10.1007/978-3-030-92499-7 · [Download PDF]
• John A. Berges, Erica Young, Kimberlee Thamatrakoln, Alison R. Taylor. Chapter 14 - From Genes to Ecosystems: using molecular information from diatoms to understand ecological processes Advances in Phytoplankton Ecology 2021;
  DOI: https://doi.org/10.1016/B978-0-12-822861-6.00023-6
• Chana F. Kranzler, Mark A. Brzezinski, Natalie R. Cohen, Robert H. Lampe, Michael Maniscalco, Claire P. Till, James Mack, Jason R. Latham, Kenneth W. Bruland, Benjamin S. Twining, Adrian Marchetti, Kimberlee Thamatrakoln. Impaired viral infection and reduced mortality of diatoms in iron limited oceanic regions Nature Geoscience 2021; 14:231-237
  DOI: https://doi.org/10.1038/s41561-021-00711-6 · [Download PDF]
• Ivia Closset, Heather M. McNair, Mark A. Brzezinski, Jeffrey W. Krause, Kimberlee Thamatrakoln. Diatom response to alterations in upwelling and nutrient dynamics associated with climate forcing in the California Current System Limnology and Oceanography 2021;
  DOI: https://doi.org/10.1002/lno.11705 · [Download PDF]
• Kyle M.J. Mayers, Alex J. Poulton, Kay D. Bidle, Kimberlee Thamatrakoln, Brittany Schieler, Sarah L.C. Giering, Seoan R. Wells, Glenn A. Tarran, Dan Mayor, Matthew Johnson, Ulf L. Riebesell, Aud Larsen, Assaf Vardi, Elizabeth L. Harvey. The Possession of Coccoliths Fails to Deter Microzooplankton Grazers Frontiers in Marine Science 2020;
  DOI: https://doi.org/10.3389/fmars.2020.569896 · [Download PDF]
• Angela Pelusi, Pasquale De Luca, Francesco Manfellotto, Kimberlee Thamatrakoln, Kay D. Bidle, Marina Montresor. Virus‐induced spore formation as a defense mechanism in marine diatoms New Phytologist 2020;
  DOI: https://doi.org/10.1111/nph.16951 · [Download PDF]
• Ben Knowles, Juan A. Bonachela, Michael J. Behrenfeld, Karen G. Bondoc, B. B. Cael, Craig A. Carlson, Nick Cieslik, Ben Diaz, Heidi L. Fuchs, Jason R. Graff, Juris A. Grasis, Kimberly H. Halsey, Liti Haramaty, Christopher T. Johns, Frank Natale, Jozef I. Nissimov, Brittany Schieler, Kimberlee Thamatrakoln, T. Frede Thingstad, Selina Våge, Cliff Watkins, Toby K. Westberry, Kay D. Bidle . Temperate infection in a virus–host system previously known for virulent dynamics Nature Communications 2020;
  DOI: https://doi.org/10.1038/s41467-020-18078-4 · [Download PDF]
• Jeffrey W. Krause, Mark A. Brzezinski, John L. Largier, Heather M. McNair, Michael Maniscalco, Kay D. Bidle, Andrew E. Allen, Kimberlee Thamatrakoln. The interaction of physical and biological factors drives phytoplankton spatial distribution in the northern California Current Limnology and Oceanography 2020; 65:1974-1989
  DOI: https://doi.org/10.1002/lno.11431 · [Download PDF]
• Chana F. Kranzler, Jeffrey W. Krause, Mark A. Brzezinski, Bethanie R. Edwards, William P. Biggs, Michael Maniscalco, John P. McCrow, Benjamin A. S. Van Mooy, Kay D. Bidle, Andrew E. Allen, Kimberlee Thamatrakoln. Silicon limitation facilitates virus infection and mortality of marine diatoms Nature Microbiology 2019; 4:1790-1797
  DOI: https://doi.org/10.1038/s41564-019-0502-x · [Download PDF]
• Robert H. Lampe, Elizabeth L. Mann, Natalie R. Cohen, Claire P. Till, Kimberlee Thamatrakoln, Mark A. Brzezinski, Kenneth W. Bruland, Benjamin S. Twining, and Adrian Marchetti. Different iron storage strategies among bloom-forming diatoms Proceedings of the National Academy of Sciences 2018; 115(52):E12275-E12284
  DOI: 10.1073/pnas.1805243115 · [Download PDF]
• Kimberlee Thamatrakoln, David Talmy, Liti Haramaty, Christopher Maniscalco, Jason R. Latham, Ben Knowles, Frank Natale, Marco J.L. Coolen, Michael J. Follows, Kay Bidle. Light regulation of coccolithophore host-virus interactions New Phytologist 2018; 221(3):1289-1302
  PMID: 30368816 · [Download PDF]
• Robert H. Lampe, Natalie R. Cohen, Kelsey A. Ellis, Kenneth W. Bruland, Maria T. Maldonado, Tawnya D. Peterson, Claire P. Till, Mark A. Brzezinski, Sibel Bargu, Kimberlee Thamatrakoln, Fedor I Kuzminov, Benjamin S. Twining, Adrian Marchetti. Divergent gene expression among phytoplankton taxa in response to upwelling Environmental Microbiology 2018; 20(8):3069-3082
  PMID: 30043484 · [Download PDF]
• Christien P. Laber, Jonathan E. Hunter, Filipa Carvalho, James R. Collins, Elias J. Hunter, Brittany M. Schieler, Emmanuel Boss, Kuldeep More, Miguel Frada, Kimberlee Thamatrakoln, Christopher M. Brown, Liti Haramaty, Justin Ossolinski, Helen Fredricks, Jozef I. Nissimov, Rebecca Vandzura, Uri Sheyn, Yoav Lehahn, Robert J. Chant, Ana M. Martins, Marco J. L. Coolen, Assaf Vardi, Giacomo R. DiTullio, Benjamin A. S. Van Mooy & Kay D. Bidle. Coccolithovirus stimulation of carbon export in the North Atlantic Nature Microbiology 2018; 3(5):537-54
  PMID: 29531367 · [Download PDF]
• Alexis L. Pasulka, Kimberlee Thamatrakoln, Sebastian H. Kopf, Yuqiang Guan, Bonnie T. Poulos, Annie Moradian, Michael J. Sweredoski, Sonja Hess, Mathew B. Sullivan, Kay D. Bidle, Victoria J. Orphan. Interrogating marine virus-host interactions and elemental transfer with BONCAT and nanoSIMS-based methods Environmental Microbiology 2018; 20(2):671-692
  PMID: 29159966 · [Download PDF]
• Natalie R Cohen, Kelsey A. Ellis, Robert H Lampe, Heather M McNair, Benjamin S Twining, Maria T Maldonado, Mark A Brzezinski, Fedor I. Kuzminov, Kimberlee Thamatrakoln, Claire P. Till, Kenneth W. Bruland, William G. Sunda, Sibel Bargu, Adrian Marchetti. Diatom transcriptional and physiological responses to changes in iron bioavailability across ocean provinces Frontiers in Marine Science ; 4(360)
  DOI: 10.3389/fmars.2017.00360 · [Download PDF]
• James R. Collins, Bethanie R. Edwards, Kimberlee Thamatrakoln, Justin E. Ossolinski, Giacomo R. DiTullio, Kay D. Bidle, Scott C. Doney, Benjamin A. S. Van Mooy. The multiple fates of sinking particles in the North Atlantic Ocean Global Biogeochemical Cycles ; 29:1471-1494
  DOI: 10.1002/2014GB005037 · [Download PDF]
• Kimberlee Thamatrakoln, Benjamin Bailleul, Christopher M. Brown, Maxim Y. Gorbunov, Adam B. Kustka, Miguel Frada, Pierre A. Joliot, Paul G. Falkowski, and Kay D. Bidle. Death-specific protein in a marine diatom regulates photosynthetic responses to iron and light availability. Proceedings of the National Academy of Sciences 2013; 110(50):20123-8
  PMID: 24277817 · [Download PDF]
• Paul Curnow, Laura Senior, Michael J. Knight, Kimberlee Thamatrakoln, Mark Hildebrand, and Paula J. Booth. Expression, purification, and reconstitution of a diatom silicon transporter. Biochemistry 2012; 51(18):3776-85
  PMID: 22530967 · [Download PDF]
• Kimberlee Thamatrakoln, Olga Korenovska, A. Kalani Niheu, Kay D. Bidle. Whole-genome expression analysis reveals a role for death-related genes in stress acclimation of the diatom Thalassiosira pseudonana. Environmental Microbiology 2012; 14(1):67-81
  PMID: 21453404 · [Download PDF]
• Kimberlee Thamatrakoln and Adam B. Kustka. When to say when: can excessive drinking explain silicon uptake in diatoms? Bioessays 2009; 31(3):322-7
  PMID: 19260019 · [Download PDF]
• Assaf Vardi, Kimberlee Thamatrakoln, Kay D. Bidle, Paul G. Falkowski. Diatom genomes come of age Genome Biology 2009; 9(12):245
  PMID: 19144209 · [Download PDF]
• Kimberlee Thamatrakoln and Mark Hildebrand. Silicon uptake in diatoms revisited: a model for saturable and nonsaturable uptake kinetics and the role of silicon transporters. Plant Physiology 2008; 146(3):1397-407
  PMID: 18162598 · [Download PDF]
• Kimberlee Thamatrakoln and Mark Hildebrand. Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle. Eukaryotic Cell 2007; 6(2):271-9
  PMID: 17172435 · [Download PDF]
• Kimberlee Thamatrakoln and Mark Hildebrand. Approaches for functional characterization of diatom silicic acid transporters. Journal of Nanoscience and Nanotechnology 2005; 5(1):158-66
  PMID: 15762174 · [Download PDF]
• Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilk. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 2004; 306(5693):79-86
  PMID: 15459382 · [Download PDF]
• An Song, Anita Patel, Kimberlee Thamatrakoln, Chian Liu, Dongdong Feng, Carol Clayberger, Alan M. Krensky. Functional domains and DNA-binding sequences of RFLAT-1/KLF13, a Krüppel-like transcription factor of activated T lymphocytes. The Journal of Biological Chemistry 2002; 277(33):30055-65
  PMID: 12050170 · [Download PDF]
• An Song, Ya-Fen Chen, Kimberlee Thamatrakoln, Theresa A. Storm, Alan M. Krensky. RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes. Immunity 1999; 10(1):93-103
  PMID: 10023774 · [Download PDF]